PTM Viewer PTM Viewer

AT5G62310.1

Arabidopsis thaliana [ath]

AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein

36 PTM sites : 1 PTM type

PLAZA: AT5G62310
Gene Family: HOM05D000207
Other Names: INCOMPLETE ROOT HAIR ELONGATION; IRE

Link out to other resources with this protein ID : TAIR   |   PeptideAtlas   |   ARAPORT   |   PhosPhAt

For each protein all PTMs are highlighted by default in the respective protein sequence (right-hand side). One can adjust a selection of PTMs in the PTM table on the left-hand side. In addition, functional protein domains and sites can be underlined if desired.

In the PTM table per PTM the PTM position and type is indicated, as well as the plain peptide sequence that was identified by mass spectrometry. The respective proteomics study is indicated by a number, providing a link to consult the experimental details. Additional PTM meta-data includes various confidence measures such as peptide score provided by search algorithms, posterior error probability (PEP), precursor mass deviation (in ppm) and modification site probability. The available confidence meta-data can be consulted in the extended PTM table by clicking SHOW CONFIDENCE. However, in the default PTM table, a color-coding of confidence is provided with green indicating high confidence, olive medium confidence, grey low confidence, and no color an unassigned confidence. More details regarding this confidence assignment can be consulted in the tutorial or the Plant PTM Viewer manuscript.

Besides confidence measures, log2 fold changes between two conditions with significance values (P- or Q-values) are shown if provided in the respective publication. Log2 fold changes are colored in heatmap-like gradient (green = induced, red = repressed) and significant values are highlighted in green. To determine significance, we employed the threshold used in the respective publication. For more details on the quantitative measurements we refer to the experimental details and respective publication, as methodologies can differ.

On the bottom of the page one can send the whole protein or a part of the protein (i.e. a functional domain) to PTM Blast. This will display aligned protein sequences that potentially report aligned PTMs.

PTMs



PTM Type

Mod AA

Pos

Peptide

Exp ID

Conf
ph S 87 TKSSPAPSPLR114
ph S 88 TKSSPAPSPLR114
ph S 92 SSPAPSPLR114
ph S 98 FSSATPLISPGQDDKDVAK114
ph T 100 FSSATPLISPGQDDK114
ph S 104 FSSATPLISPGQDDKDVAK114
ph S 152 SQRVPANSNPGVESTHVGLAK114
ph S 159 VPANSNPGVESTHVGLAK114
ph S 165 VPANSNPGVESTHVGLAK114
ph S 198 SFSHELNSK114
ph S 200 SFSHELNSK83
84b
88
100
106
109
114
ph S 205 SFSHELNSK114
ph S 390 QDDQNSNSGADGVEVNTAR114
ph T 401 QDDQNSNSGADGVEVNTAR114
ph S 410 STDSTSSNFR114
ph S 422 KLPSAAEK114
ph S 457 VYGDENAENLHSPSGQPASADR114
ph S 464 VYGDENAENLHSPSGQPASADR114
ph T 539 ILESWTPK114
ph S 552 AVADSARLSNSSR114
ph S 556 AVADSARLSNSSR114
ph S 568 QEDLDEISQR114
ph S 572 CSDDMLDCVPR114
ph T 612 DSSAGSLTPPSPATPR114
ph S 615 DSSAGSLTPPSPATPR114
ph S 622 NSQVDLLLSGR114
ph S 629 NSQVDLLLSGRK114
ph T 633 KTISELENYQQINK114
ph S 727 VDSSNAMPDEESSADEDTVR114
ph S 735 SLRASPLNPR114
ph S 739 SLRASPLNPR114
ph S 1128 YSFSNFSFK114
ph S 1130 YSFSNFSFK114
ph S 1133 YSFSNFSFK114
ph S 1162 ESVEASNQSAPRPET114
ph T 1168 ESVEASNQSAPRPET43
114

Sequence

Length: 1168

MSTTEPSPENDRDPQPTTISTPTSTNAKLLKKIPAIPFRHSDKEGEDEQAKTDEVTTELAGEGPMSHDSPEILAPSSLGLNHIRTKSSPAPSPLRFSSATPLISPGQDDKDVAKEKPRVGVVDARADARARWPIPPHQPDQGKKVQWSQSKSQRVPANSNPGVESTHVGLAKETQSPRFQAILRVTSGRKKKAHDIKSFSHELNSKGVRPFPVWRSRAVGHMEEIMAAIRTKFDKQKEDVDADLGVFAGYLVTTLESTPESNKELRVGLEDLLVEARQCATMPASEFWLKCEGIVQKLDDKRQELPMGGLKQAHNRLLFILTRCNRLVQFRKESGYVEEHILGMHQLSDLGVYPEQMVEISRQQDLLREKEIQKINEKQNLAGKQDDQNSNSGADGVEVNTARSTDSTSSNFRMSSWKKLPSAAEKNRSLNNTPKAKGESKIQPKVYGDENAENLHSPSGQPASADRSALWGFWADHQCVTYDNSMICRICEVEIPVVHVEEHSRICTIADRCDLKGINVNLRLERVAESLEKILESWTPKSSVTPRAVADSARLSNSSRQEDLDEISQRCSDDMLDCVPRSQNTFSLDELNILNEMSMTNGTKDSSAGSLTPPSPATPRNSQVDLLLSGRKTISELENYQQINKLLDIARSVANVNVCGYSSLDFMIEQLDELKYVIQDRKADALVVETFGRRIEKLLQEKYIELCGLIDDEKVDSSNAMPDEESSADEDTVRSLRASPLNPRAKDRTSIEDFEIIKPISRGAFGRVFLAKKRATGDLFAIKVLKKADMIRKNAVESILAERNILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLFSLLRNLGCLDEDMARIYIAEVVLALEYLHSVNIIHRDLKPDNLLINQDGHIKLTDFGLSKVGLINSTDDLSGESSLGNSGFFAEDGSKAQHSQGKDSRKKHAVVGTPDYLAPEILLGMGHGKTADWWSVGVILFEVLVGIPPFNAETPQQIFENIINRDIPWPNVPEEISYEAHDLINKLLTENPVQRLGATGAGEVKQHHFFKDINWDTLARQKAMFVPSAEPQDTSYFMSRYIWNPEDENVHGGSDFDDLTDTCSSSSFNTQEEDGDECGSLAEFGNGPNLAVKYSFSNFSFKNLSQLASINYDLVLKNAKESVEASNQSAPRPET

ID PTM Type Color
ph Phosphorylation X

Domains & Sites

Clear highlighted range 
Interpro Domains
Show IPR ID From To
IPR000719 754 1043
IPR000961 1044 1144
Sites
Show Type Position
Site 877
Active Site 760
Active Site 783

BLAST


Perform a BLAST search for this sequence, or a part of this sequence (minimum 50 characters)
A downloadable tutorial can be found here